Anyway, instead of continually getting peeved with Apple for not ever fixing any bugs in Grapher for over 10 years (a job that I would gladly take the mantle on, by the way: anyone at Apple listening??), I took matters into my own hands and started experimenting with some open source plotting libraries. In particular, I've taken somewhat of a liking for matplotlib, a famous Python package. The boon is, it can generate pdf files properly (unlike Grapher, which basically puts the bitmap into a pdf file and adds the extension .pdf, but when you zoom in, it's blocky and clearly still a bitmap). Honestly, though, it is in fact a lot more work (which was mitigated somewhat by defining some functions).
Here are the results for plotting the Pasta Parametrization in matplotlib (specifically, the mplot3d toolkit):
Of course, I should probably figure out how to control the lighting better: it doesn't look as good as Grapher's (at a scale for which the resolution issue is not a problem). And here are the matching formulas (at a larger size than the old version):
Useful content, I have bookmarked this page for my future reference.
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